V4 or V6?
For V6:
my parents have an 99 4runner and it did the same thing. i've change the TPS, spark plugs, the 3 plug wires(the other 3 is coil pack), and clean the MAF, and now its fine. When ur doing the plugs just unhook the battery so that when ur done the ecu will be reset. maybe this might happen or not but when u first start the car after the plug change, it might start to feel like its goin to die after a few seconds, so just rev it a little until its back to normal. then let the car idle for about 10-15 min before taking it out for a test drive.
spark plug change should just take about an hour or less if u know what ur doin and how to get to them. when ur doing the plugs this is a good time to cleaned the throttle body and MAF.
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